1 Intro
This report provides some basic description and visualization of the MetaLab taxonomy results. The report is based on the MetaLab_taxonomy.xlsx, without defined experimental design/grouping information. Users can use this to quickly check the taxonomic profile of the dataset at each taxonomic level.
2 Sample overview
- Number of samples in your dataset: 18
- Number of species identified: 118
- Number of genera identified: 60
- Number of families identified: 34
- Number of orders identified: 24
- Number of classes identified: 21
- Number of phyla identified: 12
3 Identification per sample
4 Alpha diversity
The figure below displays the alpha-diversity (Shannon-Wiener index) on the species level.
5 Beta diversity
The figure below displays the beta-diversity on the species level, visualized using PCoA.
6 Sample Clustering
Visualize sample clustering based on the species-level composition. Distance measure used is “euclidean”, and agglomeration method used is “ward.D”.
